PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029294m
Common NameCICLE_v10029294mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 206aa    MW: 22821.6 Da    PI: 6.5949
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029294mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-08535636
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg 36
                     C+ ++++e++ fC  ++  lC  C    H+ 
  Ciclev10029294m  5 CDVCDKEEASVFCSADEAALCVACDRRVHHA 35
                     **************************99744 PP

2zf-B_box30.48.1e-105495237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     e + C+ ++e ++ lfC++++  lC++C   +Hk       H
  Ciclev10029294m 54 ESPLCDICQERRALLFCQEDRAILCRECDIPIHKAseytkkH 95
                     6789*****************************876666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.064147IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
CDDcd000216.64E-7545No hitNo description
PfamPF006435.1E-6542IPR000315B-box-type zinc finger
SMARTSM003362.1E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.15353100IPR000315B-box-type zinc finger
PfamPF006433.2E-85496IPR000315B-box-type zinc finger
CDDcd000211.85E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCSAD EAALCVACDR RVHHANKLAS KHPRFNLVSP SYKESPLCDI  60
CQERRALLFC QEDRAILCRE CDIPIHKASE YTKKHNRFLL TGVKLTASAS ATFNTTYNPS  120
PSSSTCCDTT KTTTTSIDDQ KKISPSSHSN SIFSSNSTPR DNHISDTSSI SEYLMETLPG  180
WRVDDFLDPS SYATSTNVLC KVCDL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423431.11e-150hypothetical protein CICLE_v10029294mg
SwissprotQ0IGM78e-72BBX20_ARATH; B-box zinc finger protein 20
TrEMBLV4SI421e-150V4SI42_9R
STRINGPOPTR_0004s16810.19e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.19e-63DBB family protein